Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Foxa1

Cell type

Cell type Class
Liver
Cell type
Liver
MeSH Description
A large lobed glandular organ in the abdomen of vertebrates that is responsible for detoxification, metabolism, synthesis and storage of various substances.

Attributes by original data submitter

Sample

source_name
liver
strain
C57BL/6N
Sex
male
replicate animal
1
chip antibody
FOXA1 (abcam, ab5089)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Chromatin was fragmented by sonication with Covaris S220. Immunoprecipitation was performed with FOXA1 antibody (abcam, ab5089) NEXTflex Rapid DNA-Seq Library Prep Kit

Sequencing Platform

instrument_model
Illumina NovaSeq 6000

mm10

Number of total reads
6810236
Reads aligned (%)
72.1
Duplicates removed (%)
23.1
Number of peaks
2385 (qval < 1E-05)

mm9

Number of total reads
6810236
Reads aligned (%)
72.0
Duplicates removed (%)
23.4
Number of peaks
2364 (qval < 1E-05)

Base call quality data from DBCLS SRA